PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056744 | ||||||||
Common Name | LOC107058472 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB_related | ||||||||
Protein Properties | Length: 112aa MW: 12638.3 Da PI: 10.9169 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.6 | 6.7e-14 | 45 | 90 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rWT++E+ ++++ + +G+g+W+ Ia+ + Rt q+ s+ qky PGSC0003DMP400056744 45 NRWTEDEQRAFLKGLNFHGKGNWTNIAKDFVPSRTSTQVASHAQKY 90 69*****************************9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.82 | 39 | 95 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-12 | 41 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.61E-16 | 42 | 94 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-14 | 42 | 93 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.9E-11 | 43 | 93 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-11 | 45 | 90 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.82E-10 | 46 | 91 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
MDRNCSENGK SIKLFGFEIT TTTTSSAAAL TSEKDFMGRK IKKGNRWTED EQRAFLKGLN 60 FHGKGNWTNI AKDFVPSRTS TQVASHAQKY FLRLLDANSN ERKKRKKSSV F* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 102 | 106 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056744 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC247135 | 2e-88 | AC247135.8 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone slm-6o7 map 11, complete sequence. | |||
GenBank | AC254057 | 2e-88 | AC254057.5 Solanum lycopersicum strain Heinz 1706 chromosome 11 clone sle-28f9 map 11, complete sequence. | |||
GenBank | HG975523 | 2e-88 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159699.1 | 3e-77 | PREDICTED: transcription factor MYB1R1-like | ||||
Swissprot | Q9FKF9 | 3e-20 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | M1D8P1 | 6e-76 | M1D8P1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400085069 | 1e-76 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7454 | 12 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 4e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056744 |
Entrez Gene | 107058472 |
Publications ? help Back to Top | |||
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