PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400056687
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 140aa    MW: 16082.3 Da    PI: 10.3929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400056687genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.77e-1978127255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr++k +grWvAeIrd+     r  kr +lg+f+ta eAa a+++a  +l+g
  PGSC0003DMP400056687  78 NYRGVRQRK-WGRWVAEIRDV-----RmnKRRWLGSFDTALEAALAYDKATIELKG 127
                           59******9.**********6.....334*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-336139IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000182.85E-2677131No hitNo description
SuperFamilySSF541711.83E-1778131IPR016177DNA-binding domain
PROSITE profilePS5103220.0278136IPR001471AP2/ERF domain
PfamPF008471.1E-1278127IPR001471AP2/ERF domain
SMARTSM003803.4E-2578138IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2478131IPR001471AP2/ERF domain
PRINTSPR003674.5E-97990IPR001471AP2/ERF domain
PRINTSPR003674.5E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGERFVVLPH VVRIYITDND ATNSSSDEEE NLQGEMSKRH KRICKEIIIR NGKTNVTSKM  60
VSSKEKTDTK LLQENVKNYR GVRQRKWGRW VAEIRDVRMN KRRWLGSFDT ALEAALAYDK  120
ATIELKGANA VKESNPIHH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1577131156ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-1577131459ATERF1
3gcc_A3e-1577131459ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400056687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2458291e-107AC245829.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-4l7 map 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025885736.12e-71ethylene-responsive transcription factor ERF069-like
TrEMBLM1D8K02e-98M1D8K0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000850123e-99(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-28cytokinin response factor 4
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]