PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056643 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 125aa MW: 14496.7 Da PI: 7.0914 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.9 | 0.00021 | 42 | 79 | 12 | 51 |
HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYI 51 + +++N+ +e++ + + + + p+ + +K +L+++ e I PGSC0003DMP400056643 42 YLSDVNNLYEKIASEVQHsL---PNDRIEKLKMLKMTLERI 79 7899**************77...**************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MEMNIDNNTP APVHSTVQTE NENGVDWQEE LYQKIKSMKE MYLSDVNNLY EKIASEVQHS 60 LPNDRIEKLK MLKMTLERIM LFLRLNKHDI NLVQKEKLPS VEKHISFFLS GKNLHKPTSS 120 PMQG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056643 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 4e-68 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010319301.1 | 7e-48 | mediator of RNA polymerase II transcription subunit 15a-like | ||||
Refseq | XP_015073151.2 | 5e-45 | mediator of RNA polymerase II transcription subunit 15a isoform X3 | ||||
TrEMBL | M1D8G8 | 2e-85 | M1D8G8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084968 | 3e-86 | (Solanum tuberosum) |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056643 |
Publications ? help Back to Top | |||
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