PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056374 | ||||||||
Common Name | LOC102594399 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19017.3 Da PI: 8.0247 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 35 | 83 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g PGSC0003DMP400056374 35 YKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPVAAARAYDTAVYYLRG 83 9*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 5 | 1 | 24 | No hit | No description |
SuperFamily | SSF54171 | 1.31E-20 | 34 | 92 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-35 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 34 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.931 | 34 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-10 | 35 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.29E-25 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 3.4E-11 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 73 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MEVDGVRSGD AGVVGGGGGG GGGCCSGKRK NERAYKGIRM RKWGKWVAEI REPNKRSRIW 60 LGSYTTPVAA ARAYDTAVYY LRGPSARLNF PELLVGDSGE LSDLSADAIR KKAVEVGARV 120 DAIQSSMAIS DDDGDGDNQL RRHESPARLK PCWFQEKPDL NLKPEPEGPE FDYW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 18 | 92 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056374 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361741.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 4e-49 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
TrEMBL | M1D7U5 | 1e-123 | M1D7U5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084506 | 1e-124 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50260.1 | 2e-49 | cooperatively regulated by ethylene and jasmonate 1 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056374 |
Entrez Gene | 102594399 |
Publications ? help Back to Top | |||
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