PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056251 | ||||||||
Common Name | LOC102579619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bZIP | ||||||||
Protein Properties | Length: 338aa MW: 36202.2 Da PI: 9.1826 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.6 | 1e-21 | 270 | 332 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e elkre+rkq+NRe+ArrsR+RK+ae eeL+ +v++L++eN aL++e+++ +++++klk e+ PGSC0003DMP400056251 270 EHELKREKRKQSNRESARRSRLRKQAEAEELAVRVQSLTSENLALRSEINKFSEHSEKLKVEN 332 679*********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 1.5E-30 | 1 | 93 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.4E-15 | 131 | 245 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-16 | 265 | 329 | No hit | No description |
Pfam | PF00170 | 4.9E-20 | 270 | 332 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 8.2E-19 | 270 | 334 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.599 | 272 | 335 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-10 | 273 | 329 | No hit | No description |
CDD | cd14702 | 1.04E-20 | 275 | 324 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 277 | 292 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGNIEDGKSS TPEKSFSTAP DQSNFHVYPD WAAMQAYYGH RVAVPPYVNP AVAPGHAPHP 60 YMWGPLPPMM PPYGTPYAGV YAHGGVYPHP GVPIVSRPQA HGMTSSPAVS QTMNTASLSM 120 DASAKSSGNS DQGLMSQSKG FNGLGMSIGN FTVDNGDGTD HGPSQSGQTE GSSDGSNIHT 180 AEVGEHRKKR SREATPNNSG DRKSQRLCSP QRTKEVNGAS EKGIGNPGDI AEKLAGTTFS 240 PIMTTTPLVK SSPTSRISPA VPGEVWLQNE HELKREKRKQ SNRESARRSR LRKQAEAEEL 300 AVRVQSLTSE NLALRSEINK FSEHSEKLKV ENAALMV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 286 | 292 | RRSRLRK |
2 | 286 | 293 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056251 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | Z48603 | 0.0 | Z48603.1 N.tabacum mRNA for TAF-3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345571.1 | 0.0 | PREDICTED: transcriptional activator TAF-1-like | ||||
Refseq | XP_015163426.1 | 0.0 | PREDICTED: transcriptional activator TAF-1-like | ||||
Swissprot | Q99089 | 1e-103 | CPRF1_PETCR; Common plant regulatory factor 1 | ||||
TrEMBL | M1D7J9 | 0.0 | M1D7J9_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1D7K0 | 0.0 | M1D7K0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400084203 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46270.1 | 5e-70 | G-box binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056251 |
Entrez Gene | 102579619 |
Publications ? help Back to Top | |||
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