PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400056213 | ||||||||
Common Name | LOC102602352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 180aa MW: 19921.9 Da PI: 8.4917 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90 | 2.3e-28 | 8 | 63 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRrev 57 Y+eCl+NhAaslG++a+DGCgEf+ +++++ g +++l+CaACgCHRnFHR+ + PGSC0003DMP400056213 8 DIYRECLRNHAASLGSYATDGCGEFTLDDSNTspGGSTSLNCAACGCHRNFHRKFT 63 57************************98666556779****************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.8E-24 | 9 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.1E-24 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.972 | 10 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 9.0E-18 | 10 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-28 | 91 | 162 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.45E-16 | 93 | 160 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.7E-27 | 102 | 160 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MQGAKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDSNTS PGGSTSLNCA ACGCHRNFHR 60 KFTCGGSYSN NSSRDDREII AAHDYRLATT EESPAVSERS GKKRFRTKFT GDQKEKMLAF 120 AEKLGWTLQR KDEENETERF CREIGVSRKV FKVWMHNHKN NSSSVSSTIT GNNASSLTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-21 | 103 | 164 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400056213 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363993.1 | 1e-132 | PREDICTED: zinc-finger homeodomain protein 9-like | ||||
TrEMBL | M1D7H0 | 1e-131 | M1D7H0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083993 | 1e-131 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11865 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 6e-39 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400056213 |
Entrez Gene | 102602352 |
Publications ? help Back to Top | |||
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