PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055864
Common NameLOC107061956
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 417aa    MW: 46807.7 Da    PI: 8.7996
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055864genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.85.1e-15198245355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           + hn+ ErrRR riN+++  L++l+P+a      K +Ka++Le++++Y+k+Lq
  PGSC0003DMP400055864 198 AVHNQSERRRRVRINEKMKALQKLVPNA-----SKTDKASMLEEVIKYLKQLQ 245
                           57*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.5E-16192265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.08E-15192249No hitNo description
SuperFamilySSF474591.2E-17192264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.688195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12198245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-15201250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MSHHTWNFSH QKQVVEKEVE ENRYPRSHVH NQQNQVDPMS NKCEVAELTW ENGQVAMHRL  60
GSNLSNEQTK HTWGKAGDTL ESIVHQATLQ KQNHSYIMGS DGQNQANINR DKNASYGAQQ  120
TRGVLKRMRS SDSDPQLYIG GISLEHLNAR ASARDNDITM VTWPCNEDSA CHGGSENKEE  180
LERETKSSNP SKRSRRAAVH NQSERRRRVR INEKMKALQK LVPNASKTDK ASMLEEVIKY  240
LKQLQAQIHM ISYAKNMEQQ MLMMMQPHIQ MPLLARMSDL SLGMGTAGMI NNMTANLARA  300
PYQSPLIYPT SIATPSCHPF MSPAFGMPPA IHTQPAAQVA NYGDAPSTTV TKAAATAPNI  360
ATTSFYPFND PYNAFLAQSM KMELNNEMLA QYMQQANQSM QSKFNQENVN IQGEKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195207RAAVHNQSERRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055864
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260160.0AC226016.1 Solanum lycopersicum chromosome 6 clone C06SLm0065P01, complete sequence.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167498.10.0PREDICTED: transcription factor UNE10-like isoform X2
TrEMBLM1D6M40.0M1D6M4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000831640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-39bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]