PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400055848 | ||||||||
Common Name | LOC102587309 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TCP | ||||||||
Protein Properties | Length: 411aa MW: 44476.6 Da PI: 7.2683 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.8 | 6.5e-41 | 88 | 255 | 2 | 126 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s + PGSC0003DMP400055848 88 VPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSMSVPs 176 689******************************************************************99987777777777555556 PP TCP 89 .........................................kaaksaakskksqksaasalnlakesrakarararert 126 ++ +s ++ + +q+ + l+l++ s +++ +r+r ++ PGSC0003DMP400055848 177 qlrssyfnpnfslsqrrslfqgiglssdrsattllnfqtgnSNPSSLHQFQAKQEMRDNSLDLSETSIEESLSRKRRHD 255 6667788888888899999999999887777777777777433333334455555555557777777777777655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.2E-45 | 92 | 265 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.923 | 94 | 148 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MEGGGGDDHH HHHNHQHHQH HQQYRPNNFP FQLLEKKEDE PCSSSSAANN INYPSLAISP 60 SDTNTNINPN SNDLQITVAS TDTAKKPVPK RTSTKDRHTK VDGRGRRIRM PALCAARVFQ 120 LTRELGHKSD GETIEWLLQQ AEPAVIAATG TGTIPANFTS LNISLRSSGS SMSVPSQLRS 180 SYFNPNFSLS QRRSLFQGIG LSSDRSATTL LNFQTGNSNP SSLHQFQAKQ EMRDNSLDLS 240 ETSIEESLSR KRRHDLDLQQ QQEQNEQQMG SYLLQSSSSG TMPATHSSIP ANFWMLTNNN 300 NTQVLGGDPV WTFPSVNNSA AALYRSTMSS GLHFMNFPTP VALLPTQQFG GGGGGGGGNG 360 STLAGEGQLG MVTGLNPYRP CSGVSESQAS GSHSHHGGDD RHDSTSHHNS * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00396 | DAP | Transfer from AT3G47620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400055848 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013305 | 0.0 | BT013305.1 Lycopersicon esculentum clone 134950R, mRNA sequence. | |||
GenBank | GQ496335 | 0.0 | GQ496335.1 Solanum lycopersicum TCP transcription factor 17 (TCP17) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354786.1 | 0.0 | PREDICTED: transcription factor TCP14-like | ||||
Swissprot | Q93Z00 | 2e-64 | TCP14_ARATH; Transcription factor TCP14 | ||||
TrEMBL | M1D6K8 | 0.0 | M1D6K8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400083148 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2882 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47620.1 | 2e-61 | TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400055848 |
Entrez Gene | 102587309 |
Publications ? help Back to Top | |||
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