PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055798
Common NameLOC102583986
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 493aa    MW: 53525.5 Da    PI: 6.4391
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055798genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof116.31.2e-36140199261
                zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                           ++k+l+cprC+s++tkfCyynn +++qPr+fC++C+ryWt+GG++rn+PvG+grrknk+ 
  PGSC0003DMP400055798 140 PDKILPCPRCNSSDTKFCYYNNNNVNQPRHFCRSCQRYWTAGGTMRNLPVGAGRRKNKNL 199
                           7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-28137197IPR003851Zinc finger, Dof-type
PfamPF027017.9E-31142198IPR003851Zinc finger, Dof-type
Gene3DG3DSA:2.20.25.108.7E-4144182No hitNo description
PROSITE profilePS5088427.885144198IPR003851Zinc finger, Dof-type
PROSITE patternPS013610146182IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MTCDSEIKLF GKILPVVVSG AGRGLSGSDG VRYEGNRNRS DLDRCLEGSK ASSVEKDEGI  60
EYEKQEAEKD DISGELSEAK SEEGDQNQMM EESENTKTPS ESESSPKSST EEDPQAVKSS  120
ETGNEPTNVS NSEQNNLKKP DKILPCPRCN SSDTKFCYYN NNNVNQPRHF CRSCQRYWTA  180
GGTMRNLPVG AGRRKNKNLA SQYRHISIPE GLLAAGIESP NGLIHHPIFK PNGTILSFGP  240
DIPLCEPMAS ALNQAEKRVS NGIQNGSHKS EVNNSSCKGG DTGDECYRGS NIPTPNMMVE  300
EGKGEAHKAV MHGINGIPSP VPCLHGVPWP FPWNAAVPMS AICPIPFPMP FFPTPYWNCS  360
VPPWSNPWLS PPLRAANEKT SGSDPTSPLG KHSREGDLLK PSNPGGKEQS DQKYSEGSIL  420
VPKTLRIDDP DEAAKSSIWS TLGIKYDSAN RGEFFKALQP KSNDKHNKAN TSPVLHTNPA  480
ALSRSITFQQ SA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055798
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006354775.10.0PREDICTED: cyclic dof factor 3-like
TrEMBLM1D6F90.0M1D6F9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000830800.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53224122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.14e-79cycling DOF factor 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]