PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055736
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 428aa    MW: 47977.3 Da    PI: 7.6864
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055736genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.26.8e-09138158526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            C+ f++ G C++Gd+C FaHg
  PGSC0003DMP400055736 138 VCSEFRK-GNCSRGDNCEFAHG 158
                           7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.75E-5132162IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-6133159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45134160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5137160IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-7138158IPR000571Zinc finger, CCCH-type
SMARTSM003564.4168191IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEGLCAELHH HKFHPSHQLY KKSLRDIDIP PRKLLSRRST LSSIDHVVSD VQFMDSPKSV  60
GGLGTESDTL FQKFLPYNSL DDDDDADPYS SDHFRMYEFK VRRCTRSRSH DWTDCPFAHP  120
GEKARRRDPR RFHYSGTVCS EFRKGNCSRG DNCEFAHGVF ECWLHPTRYR TEACKDGKNC  180
KRKICFFAHT SRQLRVLPPS CYESGSSPKN LNNSPIEKKY RNMNHCCVFC HSVSASPTST  240
LIGMSHISPP MSPSLSPPLS PANRNQFSSP MSRYTDRFGS VESSSGMGQL DPSGLMSYKD  300
ALTELVSSLE AMNVNHEPNS SAAVAAAHSH SVNFDGNLPW LDVNFNNNNS YDDQQQFLLS  360
PSTPSPSPIS NSRTKFYTRE FPSASPVSSS RLSFVEEPNN NNATNRFYSD NGLCGGPDLG  420
WVNDLLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081171.10.0zinc finger CCCH domain-containing protein 2
TrEMBLM1D6B10.0M1D6B1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000828140.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA105952125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-76C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]