PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055694
Common NameLOC102591828
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 362aa    MW: 41761.1 Da    PI: 5.0652
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055694genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1093.5e-34671582102
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Flkk++e+++d++++++isws+n+nsfvv+d+++f+ ++Lpk+Fkh+nf+SF+RQLn+Y F+k+++ +         weF+++ F+kgk
  PGSC0003DMP400055694  67 FLKKTFEMVDDPNTDSIISWSNNQNSFVVWDPHKFSIHLLPKHFKHNNFSSFIRQLNTYRFRKIDSVR---------WEFANEGFQKGK 146
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkks 102
                           k+ll +ikr+k+
  PGSC0003DMP400055694 147 KHLLVNIKRRKQ 158
                           **********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.9E-3761151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5363156IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.18E-3363156IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3067156IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-186790IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-18105117IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340106130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.0E-18118130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEEETMREEK TMVIDVNENE KNVNGGVVLE VKEEPVIFID EDDIIGDFTC SLPKPLDGLR  60
DVGPPPFLKK TFEMVDDPNT DSIISWSNNQ NSFVVWDPHK FSIHLLPKHF KHNNFSSFIR  120
QLNTYRFRKI DSVRWEFANE GFQKGKKHLL VNIKRRKQYP QQGGGAKSWV GGCCKDGTEA  180
AEIEKLKKDH NTLKMEILKL KQQQESTDTY LATMNERLQN SETKQKYMVI FMAKTFNNPQ  240
FVQHLIEKMK QGGKTTTVEN GTKKRRLYSD ENQEEYTTIK SEIHTLFSCD ESSNSPVEEQ  300
KGKGNNNSSP EMVSENYILW EKLMEDDMIC ENGAETDKYQ SEIVLELEDL ISNPSECKCM  360
P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-226515627129Heat shock factor protein 1
5d5v_B7e-226515627129Heat shock factor protein 1
5d5v_D7e-226515627129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055694
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357708.10.0PREDICTED: heat shock factor protein HSF30-like
TrEMBLM1D6700.0M1D670_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000827520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-81heat shock transcription factor A2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]