PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400055611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YB | ||||||||
Protein Properties | Length: 133aa MW: 14570.7 Da PI: 7.1866 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 174.2 | 1.4e-54 | 27 | 120 | 1 | 94 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 vreqdr+lPian++rimkk lPanaki+k+ak+tvqecvsefisf+tseasdkcq+ekrktingddl+w+l+tlGfedy+eplk+yl + PGSC0003DMP400055611 27 VREQDRYLPIANIGRIMKKGLPANAKIAKEAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLVWSLTTLGFEDYIEPLKAYLIR 115 69*************************************************************************************** PP NF-YB 90 yrele 94 yre+ PGSC0003DMP400055611 116 YREVI 120 ***85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.0E-50 | 23 | 119 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.71E-37 | 30 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-26 | 33 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 1.0E-19 | 61 | 79 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 64 | 80 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 1.0E-19 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 1.0E-19 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MAEVPASPGG GCGSHESGGE RSPQSNVREQ DRYLPIANIG RIMKKGLPAN AKIAKEAKDT 60 VQECVSEFIS FITSEASDKC QKEKRKTING DDLVWSLTTL GFEDYIEPLK AYLIRYREVI 120 AVPPQLLMIS KL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 6e-46 | 27 | 118 | 1 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 6e-46 | 27 | 118 | 1 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400055611 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-105 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359336.1 | 5e-84 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
Refseq | XP_015074252.1 | 5e-84 | nuclear transcription factor Y subunit B-10-like | ||||
Refseq | XP_015169862.1 | 5e-84 | PREDICTED: nuclear transcription factor Y subunit B-1-like | ||||
Refseq | XP_027772469.1 | 5e-84 | nuclear transcription factor Y subunit B-10-like | ||||
Swissprot | Q8VYK4 | 2e-66 | NFYB8_ARATH; Nuclear transcription factor Y subunit B-8 | ||||
TrEMBL | M1D601 | 4e-93 | M1D601_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400082465 | 7e-94 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37060.3 | 5e-58 | nuclear factor Y, subunit B8 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400055611 |
Publications ? help Back to Top | |||
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