PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055463
Common NameLOC102593409
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 827aa    MW: 89583 Da    PI: 5.4634
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055463genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16525563240
                   TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  PGSC0003DMP400055463 525 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 563
                           589**********************************96 PP
2TCR512.8e-16610648139
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                           ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  PGSC0003DMP400055463 610 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 648
                           589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-17524565IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.557525650IPR005172CRC domain
PfamPF036381.0E-11527562IPR005172CRC domain
SMARTSM011147.5E-18610651IPR033467Tesmin/TSO1-like CXC domain
PfamPF036388.1E-12612648IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MSKKEGEDEK VSLESENVEV KSEEVEVEGR KSEVNVKGEE GGGGGGVVVV MDTPERNKSQ  60
IATPISKFEE SPFSNFLNNL SPIKPVKAAH FPQTLNTLSF GSIPSVFTSP HVSSARESRF  120
LRRHLLSDPS KPEFASDNSV KVDNDEAMPD AVNSSNEPKE SFGSQNSMVE ASNECSKLAV  180
ERTLNYECND SPSTLPTGSF RGKSLSEFAG SSVTYVPLVQ GMSGKGLLRC EVNTEGKNEL  240
DPNKEAPGCD WENLICDATD LLIFDSPGDP EAFTKAAGPN LRHFGFASNE MQNMQVFGQA  300
STSECGGDGS ETEKPSTQPG DETQVNEYAE NQNMKPDSSL TNDGMGVGQS ERTDNEMVST  360
LYRGMRRRCL VFEMVGSRRK HVDEGSGSSA VQDTDGNLAC NEKQLVPYKA VNESSRCILP  420
GIGLHLNALA ASSKDGKVVK HETNASGKQL LITSGSAVSL HPLVAGQESM SKSQPETSRE  480
IVPFENSVPL MEDASLAPGY VNNEELSQTS PKKKRRRLEP GEGEACKRCN CKKSKCLKLY  540
CECFAAGVYC VEPCACQDCF NKPIHEDTVL ATRKQIESRN PLAFAPKVIR NADTISETGD  600
DSSKTPASAR HKRGCNCKKS GCLKKYCECY QGGVGCSINC RCEGCKNAFG RKDGSIFIGT  660
DGDAEEEETD AYEKSTVDRA FHKNLLHSDV ELNPDSTVPA TPLAFRRPPM QLPFSLKNKP  720
PRSSFLSIGS SSGIFAGQGV GRPDFFQPQP QPKFEKPFES IQEDEMPEIL QQGGTSSPIS  780
GIKTASPNRK RVSPPHCDFA NSPGRRSSRK LILQSIPSFP SLTPNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-1852964714120Protein lin-54 homolog
5fd3_B9e-1852964714120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510517PKKKRRRL
2511516KKKRRR
3513517KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006360749.10.0PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLM1D5M10.0M1D5M1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000820980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-164TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]