PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400055027 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 25122.6 Da PI: 4.5552 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 10 | 58 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g PGSC0003DMP400055027 10 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 58 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.11E-22 | 9 | 67 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 9 | 66 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-39 | 9 | 72 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 9 | 67 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.6E-12 | 10 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-12 | 10 | 21 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.56E-33 | 10 | 67 | No hit | No description |
PRINTS | PR00367 | 4.7E-12 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MKKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD REARKIRGKK 60 AKVNFPNEDD DHYYSHPEPP CESYDTTSTY NQESNNCYPF YSIENTEPVM EFAIANKNSS 120 GSAYNGIEDQ NVEGEEQTVK NSNNRIVEEE EKTEDEVQIL SDELMAYESL MKFYEIPYVD 180 GQSVAATVNP AAETAVGGGS MELWSFDDVS RLQPSYNVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-23 | 10 | 66 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 3e-22 | 10 | 68 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400055027 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | STU77655 | 0.0 | U77655.1 Solanum tuberosum DNA binding protein homolog (STWAAEIRD) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275232.1 | 1e-144 | DNA binding protein homolog | ||||
TrEMBL | M1D4K4 | 1e-161 | M1D4K4_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1D4K5 | 1e-162 | M1D4K5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081322 | 1e-162 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 3e-29 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400055027 |
Publications ? help Back to Top | |||
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