PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400055026
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 279aa    MW: 31714 Da    PI: 4.8244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400055026genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-1969117355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  PGSC0003DMP400055026  69 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 117
                           9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-3968131IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3268126IPR001471AP2/ERF domain
PROSITE profilePS5103223.77568125IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-2268126IPR016177DNA-binding domain
CDDcd000183.48E-3369126No hitNo description
PfamPF008475.4E-1269117IPR001471AP2/ERF domain
PRINTSPR003676.8E-126980IPR001471AP2/ERF domain
PRINTSPR003676.8E-1291107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MCGGAILYDI IPRDRRLSST DLWPSSADFW QTSSFSKPIS TQNVPPKPKR AQLSRGSEQM  60
KKRQRKNLYR GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDR EARKIRGKKA  120
KVNFPNEDDD HYYSHPEPPC ESYDTTSTYN QESNNCYPFY SIENTEPVME FAIANKNSSG  180
SAYNGIEDQN VEGEEQTVKN SNNRIVEEEE KTEDEVQILS DELMAYESLM KFYEIPYVDG  240
QSVAATVNPA AETAVGGGSM ELWSFDDVSR LQPSYNVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2269125360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-21691271574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400055026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankSTU776550.0U77655.1 Solanum tuberosum DNA binding protein homolog (STWAAEIRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275232.10.0DNA binding protein homolog
TrEMBLM1D4K40.0M1D4K4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000813220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-38ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]