PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400055009 | ||||||||
Common Name | LOC102581508 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 180aa MW: 20760.2 Da PI: 8.3454 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.8e-19 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++++q++ Le F +n++++ +++ +LA++lgL+ rqV +W+qN+Ra++k PGSC0003DMP400055009 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWK 69 67789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111.4 | 6.1e-36 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +k+rl+++qv+lLE sF++++kL+++rK++la+eLgl prqva+W+qn+RAR+k++ lE+dy++L++++d+ e+ne+L+ eve+Lr+e PGSC0003DMP400055009 16 HKKRLNQDQVRLLEISFSSNNKLDSDRKSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKTLQQRLDNALEDNEKLKLEVERLRKE 104 69**************************************************************************************9 PP HD-ZIP_I/II 91 lke 93 l++ PGSC0003DMP400055009 105 LNK 107 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.4E-16 | 14 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.0E-16 | 16 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.35E-14 | 16 | 72 | No hit | No description |
SuperFamily | SSF46689 | 3.94E-17 | 16 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.483 | 17 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-19 | 18 | 78 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.9E-6 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.9E-6 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MNFLSSQTRK IHLKCHKKRL NQDQVRLLEI SFSSNNKLDS DRKSQLAQEL GLPPRQVAIW 60 YQNKRARWKS QSLEVDYKTL QQRLDNALED NEKLKLEVER LRKELNKNQE VLLGFNTTTN 120 NYSSISSSCD EVGSTSCLQL HDQSKHNHLD KEFYACLIGD EGHFGTHHDG HNFFASSLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 18 | RKIHLKCHKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400055009 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364310.1 | 1e-130 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | M1D4I8 | 1e-129 | M1D4I8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081296 | 1e-130 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-24 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400055009 |
Entrez Gene | 102581508 |
Publications ? help Back to Top | |||
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