PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400054965 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 187aa MW: 21397.2 Da PI: 10.1019 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.4 | 2e-21 | 7 | 89 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ + +fF++ +k+y+tg+rk+r+++ + +W++tgk+++v+ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l PGSC0003DMP400054965 7 KDGQVRHFFHRPSKAYTTGTRKRRKVHteidggETRWHKTGKTRPVYI-SGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 89 445566******************744446655778************.999***********66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.521 | 1 | 108 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-24 | 7 | 108 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-7 | 13 | 89 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MHAGVSKDGQ VRHFFHRPSK AYTTGTRKRR KVHTEIDGGE TRWHKTGKTR PVYISGVLKG 60 YKKILVLYTN YGRQRKPEKT NWVMHQYHLG ENEEEKDGEL VVSKVFYQTQ PRQCGSLTIK 120 KPLDHSNNII INPVLKTTNF VDYYNPNPFI SYNVESQSSP HELIQNLVVH GDGSSFVIPS 180 EASKEK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400054965 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006364309.1 | 1e-133 | PREDICTED: NAC domain-containing protein 73 | ||||
Refseq | XP_015159378.1 | 1e-133 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 4e-65 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | M1D4F0 | 1e-136 | M1D4F0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400081229 | 1e-133 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 2e-67 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400054965 |
Publications ? help Back to Top | |||
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