PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054964
Common NameLOC102580833
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 294aa    MW: 33256.7 Da    PI: 8.8762
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054964genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.71.4e-33561961128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.. 79 
                           lp+G++F+P+d e++ e+L++kv +++++++        +i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++  
  PGSC0003DMP400054964  56 LPAGVKFDPSDGEIL-EHLEAKVLSDTHKIHPliddfilTIDGQnGICYTHPQKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHte 142
                           799***********9.99*****99995553344444433665546**********.566677888******************74444 PP

                   NAM  80 ....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v+  +g l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  PGSC0003DMP400054964 143 idggETRWHKTGKTRPVYI-SGVLKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 196
                           6655778************.999***********66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3849215IPR003441NAC domain
PROSITE profilePS5100532.75856215IPR003441NAC domain
PfamPF023654.3E-1457196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAWCSQSTAF PIISSSDQEN NVIMITSKTR FITCPSCGHN IQLQHQRGIL HDLPSLPAGV  60
KFDPSDGEIL EHLEAKVLSD THKIHPLIDD FILTIDGQNG ICYTHPQKLP GVSKDGQVRH  120
FFHRPSKAYT TGTRKRRKVH TEIDGGETRW HKTGKTRPVY ISGVLKGYKK ILVLYTNYGR  180
QRKPEKTNWV MHQYHLGENE EEKDGELVVS KVFYQTQPRQ CGSLTIKKPL DHSNNIIINP  240
VLKTTNFVDY YNPNPFISYN VESQSSPHEL IQNLVVHGDG SSFVIPSEAS KEK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006364309.10.0PREDICTED: NAC domain-containing protein 73
RefseqXP_015159378.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-113NAC73_ARATH; NAC domain-containing protein 73
TrEMBLM1D4E90.0M1D4E9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000812290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-116NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]