PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400054664

Common Name

LOC102602483

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Trihelix

Protein Properties

Length: 375aa MW: 43011.1 Da PI: 4.64

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400054664	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.6	4.3e-15	142	226	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L++a + r +r++l+ W+ev++++ r ++er+ +qC+++++ l+k+ykk+k + s ++s+++yf++++ PGSC0003DMP400054664 142 WSEHETFILLDAWGTRFVRHGRKSLRSEEWQEVAERVsRGSKLERTDTQCRNRLDTLKKKYKKEKMKFAET-SSTTSKWVYFKKMD 226 ***********************************666789*******************99995.66677******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.272	140	199	IPR017877	Myb-like domain
Pfam	PF13837	3.9E-20	141	228	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.2E-5	142	209	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDDIEDNGRY PPNPYGMNQG YESSNRQKLP VHDTSYSRHV DNQYVEEADD DEEVDDEEVD 60 GEEEEEDDDG EENGVQRIGK DVFDDDDDDD DEYGDSQRHQ KKRKLKSLLS SYEFAPRVPP 120 PSTTAATAPK PSFGGRNPLS DWSEHETFIL LDAWGTRFVR HGRKSLRSEE WQEVAERVSR 180 GSKLERTDTQ CRNRLDTLKK KYKKEKMKFA ETSSTTSKWV YFKKMDMLLT STPQKTGVSC 240 GMDSGEYVFM SPKTYLNRAN GLDEMRDSPA NSESADGSED LPPKRSRNVQ PGGNGNGHSF 300 KLIADSIHKF SEIYVKIENS KRQQMMELEK MRMDFHRELE LQKRQIMERA QAEIARIRQG 360 NDEENDLSAE NVSG*

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDDIEDNGRY PPNPYGMNQG YESSNRQKLP VHDTSYSRHV DNQYVEEADD DEEVDDEEVD  60
GEEEEEDDDG EENGVQRIGK DVFDDDDDDD DEYGDSQRHQ KKRKLKSLLS SYEFAPRVPP  120
PSTTAATAPK PSFGGRNPLS DWSEHETFIL LDAWGTRFVR HGRKSLRSEE WQEVAERVSR  180
GSKLERTDTQ CRNRLDTLKK KYKKEKMKFA ETSSTTSKWV YFKKMDMLLT STPQKTGVSC  240
GMDSGEYVFM SPKTYLNRAN GLDEMRDSPA NSESADGSED LPPKRSRNVQ PGGNGNGHSF  300
KLIADSIHKF SEIYVKIENS KRQQMMELEK MRMDFHRELE LQKRQIMERA QAEIARIRQG  360
NDEENDLSAE NVSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400054664

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006346580.1	0.0	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	M1D3Q3	0.0	M1D3Q3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400080593	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-68	Trihelix family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400054664
Entrez Gene	102602483

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]