PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054644
Common NameLOC102590225
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 709aa    MW: 79259.8 Da    PI: 6.3279
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054644genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.48e-06125145425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++C ff++ G+C  GdrC+F H
  PGSC0003DMP400054644 125 VPCIFFQQ-GFCLKGDRCPFFH 145
                           79******.***********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.163160IPR000571Zinc finger, CCCH-type
SMARTSM003560.00233259IPR000571Zinc finger, CCCH-type
PfamPF156637.0E-123286No hitNo description
PROSITE profilePS5010311.0376288IPR000571Zinc finger, CCCH-type
SMARTSM003560.36487IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948121148IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-4122147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5123146IPR000571Zinc finger, CCCH-type
PfamPF146080.088126145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MVGPTPPQKL QIQPPPSSTP AAAPSAEEEA LKRNTDCVYF LASPLTCKKG SECEYRHSDA  60
ARLNPRDCWY WLNGSCLNPK CAFRHPPLDG LLGAQVTTPT GSSALPVASV APTPNVPYGS  120
SKQGVPCIFF QQGFCLKGDR CPFFHAPLFV SNKAPPHPVS TEKTNFKAFG GLEKCVQEKT  180
FFQANIWKSG ELSVQAQPVE KLKTPLPKNN AAFNENVLPP NPVIDVAHHR HKPKSVPPPN  240
GNSVGRSNRV QQSARFDDHS SFQNKDDEIS RELSPGFDVL VDDELRGTDF YHGEGRYGRN  300
GGRNEYDIGR SADFTSVADV DQDMYHDVYG HDSHDRLPDR SGRVQHRASS ERVQGESAHL  360
ERRRYGRAHS PEEVREPDLR HRLSKHNRTN GLRSVISHDY ASEKHVEDRG YQSSRRDRPY  420
VPSHDSSLAS RLRGRIKIPS RSPSPTNGTD MRLDRARDRG RLSSERPQLF SQQGRLRDRI  480
KGRVQEDLND TGRNNSGPRI RRDVSENDSK FSGPRSLAEL KGQKTAETTE QNIDEQQALG  540
KRKFQKRDDY QQTGGDTVSF DGPMPLQEIL KRKRSSKTGM PSDKSEDYQH KRKDHSVPVV  600
TSSISRNNTD FGQKEESDPP SGVSADHQSP AHHGANELEA EEGMIVEEAD DQDPEAEGHD  660
QRDGDYDYEQ VDGEDYNLDE GENIDAGEEY LDDDDEDDFA KKMGVVFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054644
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355013.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLM1D3P00.0M1D3P0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000805690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40241633
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]