PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400054532
Common NameLOC102605067
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 290aa    MW: 32134.3 Da    PI: 6.5994
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400054532genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.29.1e-3451105155
               G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           kprlrWt+eLHerF++av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYR+
  PGSC0003DMP400054532  51 KPRLRWTTELHERFLDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRM 105
                           79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.39348108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-3249106IPR009057Homeodomain-like
SuperFamilySSF466892.15E-1750107IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-2451106IPR006447Myb domain, plants
PfamPF002498.2E-953104IPR001005SANT/Myb domain
PfamPF143791.9E-27149195IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MYSTLSIRNL GIEESGDFFN HHMNHNLQGS LSVDGTNLPG DSCLVLSTDP KPRLRWTTEL  60
HERFLDAVTQ LGGPDKATPK TIMRTMGVKG LTLYHLKSHL QKYRMGKQSA KEATENSKDV  120
SCPAESQDTG SSTSGSSRVI VQDINEGLQV TEALRVQMEV QRRLHEQLEV QRHLQLRIEA  180
QGKYLQSILE KACKAFNSQS LESNGLEMNR EELSELAFIN GPSLPDIGPS FENKNACHVP  240
ARLGDCLLDD CLPSNGIGGL KKRPRGFTNV NGLPMESNTR EVEWMMSNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1951107157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-1951107258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400054532
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-167HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366846.10.0PREDICTED: myb family transcription factor APL-like
SwissprotQ94A571e-108PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLM1D3F60.0M1D3F6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000803810.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37912344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-107G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]