PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400054080 | ||||||||
Common Name | LOC102603699 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 438aa MW: 48830.5 Da PI: 8.8953 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.1e-06 | 54 | 76 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H PGSC0003DMP400054080 54 YVCEICNQGFQRDQNLQMHRRRH 76 9*********************9 PP | |||||||
2 | zf-C2H2 | 16.1 | 3.2e-05 | 131 | 153 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ PGSC0003DMP400054080 131 WVCEKCSKGYAVQSDYKAHLKTC 153 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.64E-5 | 53 | 76 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 53 | 76 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 54 | 76 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 54 | 76 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 56 | 76 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS01359 | 0 | 56 | 136 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00355 | 190 | 95 | 125 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.5E-4 | 122 | 152 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.64E-5 | 126 | 151 | No hit | No description |
SMART | SM00355 | 60 | 131 | 158 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009590 | Biological Process | detection of gravity | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010031 | Biological Process | circumnutation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MLSNNNPSSS SDPFNSSENA NNASRRKRRP AGTPDPDAEV VSLSPKTLLE SDRYVCEICN 60 QGFQRDQNLQ MHRRRHKVPW KLLKRETPIV RKRVFVCPEP TCLHHDPCHA LGDLVGIKKH 120 FRRKHSNHKQ WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACS 180 MGRLRSESQS LHPPCLSRTA SSTPSPSSDT NVSTTPWSST LLKKLSSAAA AATHHANPNI 240 IKSCTNKHNL ELQLLTTTTS SSSPAFDVSV SSKPNEDHSA YNLQLSIGSS DFNESSENAN 300 EKRSSDALRL KDEAMEQLRV AMSEKAYAEE ARQQAKRQIE LAEQEFANAK RIRQQAQAEL 360 DKANALKEHA IKQINSTLSQ ITCHSCKQKF QSTTRVSIVD ENNSLALSYI SSGLSEGHHH 420 EVANNINQNE HLKLSQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-18 | 127 | 179 | 3 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 5e-18 | 127 | 179 | 3 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00254 | DAP | Transfer from AT2G01940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400054080 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 0.0 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015159408.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Refseq | XP_015159409.1 | 0.0 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2 | ||||
Swissprot | F4IPE3 | 1e-152 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | M1D2C6 | 0.0 | M1D2C6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079735 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01940.1 | 1e-106 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400054080 |
Entrez Gene | 102603699 |