PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053917 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | DBB | ||||||||
Protein Properties | Length: 253aa MW: 27960.4 Da PI: 5.5156 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.9 | 8.9e-08 | 4 | 35 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++++e++ +C ++ lC++C + H+ PGSC0003DMP400053917 4 QCDVCDKEEASVYCSADEATLCQSCDYQVHHA 35 7***************************9743 PP | |||||||
2 | zf-B_box | 28.5 | 3.2e-09 | 55 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + C+ ++e ++ lfC++++ lC++C l +Hk Ht PGSC0003DMP400053917 55 SPLCDICQERRALLFCKEDRAILCKECDLPIHKAneHT 92 689*****************************888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.907 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.02E-5 | 3 | 33 | No hit | No description |
SMART | SM00336 | 1.5E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.3E-6 | 4 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 4.7E-15 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.381 | 53 | 100 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.5E-7 | 55 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.38E-9 | 56 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKIQCDVCDK EEASVYCSAD EATLCQSCDY QVHHANKLAS KHLRFSLIHP SFKDSPLCDI 60 CQERRALLFC KEDRAILCKE CDLPIHKANE HTKKHNRFLL SGVQLSSDVL ASNSNNQNSI 120 SPTGSAASNA GTNNFKARSG NFGMKSNSIS STTESTPNYF QVDYHVQEGS VSTSSISEYL 180 TETLPGWHVE DFLEYPSSSS YDLGYFLFCF VGDQSFCNAS GIALCLLPAL IIEYGIPICF 240 KYSLPNQFFM GD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053917 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362043.1 | 1e-147 | PREDICTED: B-box zinc finger protein 20 | ||||
Swissprot | Q0IGM7 | 7e-67 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | M1D1Y5 | 0.0 | M1D1Y5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079507 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39070.1 | 3e-69 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053917 |
Publications ? help Back to Top | |||
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