PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053706
Common NameLOC102584580
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 400aa    MW: 43831.1 Da    PI: 5.7569
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053706genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.22.6e-38177273298
                DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkife 90 
                           lfqrlwse+Dei++L+G+ d+++k++++p++d++af+ef+kks++++vsk ql +KirrLKkK++++  k k+gke +fsk+h+qk++e
  PGSC0003DMP400053706 177 LFQRLWSEDDEIAILKGMTDYRSKKKADPVADLSAFHEFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAYE 265
                           79*************************************************************************************** PP

                DUF573  91 lskkiWgs 98 
                           ls+k+Wg+
  PGSC0003DMP400053706 266 LSQKVWGK 273
                           ******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-35178272IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAKNRPEKEE EEESGEEMEV SSPGNADTES GSGSGSGSES ESESEPEQEQ PPKKPPVSAP  60
KKPQPQDDSS SSTEEESDSE SEPDPETQKP NPVVKPIASK PMDEPKKAAP IVEKKPKSKA  120
DATAKLTSPK KSTAVVGAKR PVDDGEAKES KRSKKKPEKQ IETPVSKTPT DDVKRQLFQR  180
LWSEDDEIAI LKGMTDYRSK KKADPVADLS AFHEFIKKSL HVDVSKAQLQ DKIRRLKKKY  240
ENNAGKEKKG KERTFSKPHE QKAYELSQKV WGKEKTDKVP VEVVKVENVT ASKGRSNSGG  300
EDNGVLDVVK EEKLSAEVER TVEVTPNLNL TSCGGSVAAL EKWLEEFSGL LSIEKLDEIK  360
KKSTSLQVAE AGLCLRRVNL IAEQGELMRK AMNASGIDI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053706
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363288.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLM1D1F70.0M1D1F7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-22DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]