PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 313aa MW: 32969.6 Da PI: 7.7634 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.8 | 1e-09 | 15 | 35 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtG Ck+G++Ck++H++ PGSC0003DMP400053561 15 QYYMRTGMCKFGASCKYHHPR 35 59*****************96 PP | |||||||
2 | zf-CCCH | 38 | 2.8e-12 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ PGSC0003DMP400053561 57 EKECSHYMKTGQCKFGITCKFHHPQ 81 679********************97 PP | |||||||
3 | zf-CCCH | 35.9 | 1.3e-11 | 266 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++++G Ck+G++Ck++H+p PGSC0003DMP400053561 266 PGQPECHYYMKYGDCKFGSSCKYHHPP 292 5789*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.21 | 13 | 35 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-6 | 15 | 35 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.418 | 15 | 36 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.5E-5 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.849 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-6 | 55 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-9 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-4 | 60 | 80 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.211 | 265 | 293 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-5 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.2E-9 | 267 | 292 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 269 | 292 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MFTVIMLVVP GYDLQYYMRT GMCKFGASCK YHHPRQGGES PSLVIHNIYG YPLRPNEKEC 60 SHYMKTGQCK FGITCKFHHP QPAGVQVPAS AAGPFPLPAA VPPPATYPEL QPLPVDSAEQ 120 YGMVTGNWPV IRPALLPGSY IPDTYGPMLF PPGMVPVSDW TPYLGSTSPV PYQTTQFAAG 180 AGPVPSQITH SAAGAGPVPC QTSHSAAGAG PVPSQTTQSA AGAGPVYGHT QLSASAPAYA 240 SPYVSLSASL GASSSIQDGL AFPERPGQPE CHYYMKYGDC KFGSSCKYHH PPEWSGSKAA 300 LILRAMGLPP DL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053561 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356701.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X2 | ||||
TrEMBL | M1D146 | 0.0 | M1D146_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079019 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 7e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053561 |
Publications ? help Back to Top | |||
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