PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053560
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 397aa    MW: 42133.4 Da    PI: 6.5576
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053560genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.81.4e-114973327
                          S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                          ++ C +++r+G+C yG+rC+F+H++
  PGSC0003DMP400053560 49 EPDCIYYLRNGICGYGSRCRFNHPR 73
                          589********************96 PP
2zf-CCCH34.24.3e-1197119527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                            C++++rtG Ck+G++Ck++H++
  PGSC0003DMP400053560  97 VCQYYMRTGMCKFGASCKYHHPR 119
                           6********************96 PP
3zf-CCCH37.63.7e-12141165327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C+++++tG+Ck+G +CkF+H++
  PGSC0003DMP400053560 141 EKECSHYMKTGQCKFGITCKFHHPQ 165
                           679********************97 PP
4zf-CCCH35.51.7e-11350376127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +++++C++++++G Ck+G++Ck++H+p
  PGSC0003DMP400053560 350 PGQPECHYYMKYGDCKFGSSCKYHHPP 376
                           5789*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7884674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-64974IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-94973IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-592119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.72792120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-695120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-597119IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-897119IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5138165IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849138166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6139166IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9141165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4144164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211349377IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5349376IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-9351376IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5353376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MEMVSGDQPT DDAPVTVQAS LDEETGLEEP MGQLSVGTEA GSYPERLNEP DCIYYLRNGI  60
CGYGSRCRFN HPRDRSLAVG ERRATGGEYP ERAGQFVCQY YMRTGMCKFG ASCKYHHPRQ  120
GGESPSLVIH NIYGYPLRPN EKECSHYMKT GQCKFGITCK FHHPQPAGVQ VPASAAGPFP  180
LPAAVPPPAT YPELQPLPVD SAEQYGMVTG NWPVIRPALL PGSYIPDTYG PMLFPPGMVP  240
VSDWTPYLGS TSPVPYQTTQ FAAGAGPVPS QITHSAAGAG PVPCQTSHSA AGAGPVPSQT  300
TQSAAGAGPV YGHTQLSASA PAYASPYVSL SASLGASSSI QDGLAFPERP GQPECHYYMK  360
YGDCKFGSSC KYHHPPEWSG SKAALILRAM GLPPDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168527.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168528.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168529.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168530.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168531.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168532.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168533.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168534.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168535.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168536.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168537.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168538.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168539.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168540.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168541.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168542.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168543.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168544.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168545.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
RefseqXP_015168546.10.0PREDICTED: zinc finger CCCH domain-containing protein 6-like isoform X1
TrEMBLM1D1450.0M1D145_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000790190.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1857844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-92C3H family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]