PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053333 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 201aa MW: 22683.9 Da PI: 8.6708 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.4 | 6.9e-15 | 24 | 71 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ + f +L +l+P++ kKl+Ka+iL A+ YIk+L+ PGSC0003DMP400053333 24 QDHVLAERKRRERLTQYFVTLSTLIPNL-----KKLDKASILGDAITYIKQLE 71 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.948 | 21 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-12 | 24 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-18 | 25 | 82 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-17 | 26 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.89E-14 | 26 | 75 | No hit | No description |
SMART | SM00353 | 6.0E-16 | 27 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGFGADDISQ TKKMNYSRTP LQAQDHVLAE RKRRERLTQY FVTLSTLIPN LKKLDKASIL 60 GDAITYIKQL EEQVKRLDEE ANKEPVVAVK RSRLLSNYDN SSTCNENSNK SVVPDIEVRA 120 SDGNVLIRVS CKKQEGIIKE IFSQVEMFHL TITSSSVIPF GYDTTHITIV AQMDHQLNMT 180 TDNVANKIRL SIMKVINSHE * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053333 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 1e-130 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357745.1 | 1e-146 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | M1D0K4 | 1e-145 | M1D0K4_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1D0K5 | 1e-146 | M1D0K5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078699 | 1e-146 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-48 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053333 |
Publications ? help Back to Top | |||
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