PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053331 | ||||||||
Common Name | LOC102592498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23532.3 Da PI: 6.5485 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.5 | 2.8e-14 | 129 | 176 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ ++f L +l+P++ kKl+Ka++L A++YIk+L+ PGSC0003DMP400053331 129 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIQYIKQLE 176 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.961 | 126 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-12 | 129 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-18 | 130 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.64E-14 | 131 | 180 | No hit | No description |
SuperFamily | SSF47459 | 1.57E-17 | 131 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-16 | 132 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDTWWSEMET SSMNDHNFVN QSETMTPFNE LPFNSKPFST FSPPPPPSSV ISNYSYSNSM 60 PAKNQFENLN TFKVVKREVP SGTTINFSSS VNSMDDSDFG DIEAMRFGAA VTTTTDQKKS 120 YNRTSVQAQD HVLAERKRRE RLTQRFIALS TLIPNLKKLD KATVLGDAIQ YIKQLEEQVK 180 TLEEKNKPEI PAAKRPRLVS SCDDSSSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_B | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_E | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_F | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_G | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_I | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_M | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
5gnj_N | 1e-13 | 130 | 179 | 8 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 139 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053331 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357857.2 | 1e-154 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_015169068.1 | 1e-154 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_015169069.1 | 1e-154 | PREDICTED: transcription factor bHLH18-like | ||||
TrEMBL | M1D0K3 | 1e-153 | M1D0K3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078698 | 1e-154 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4508 | 14 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053331 |
Entrez Gene | 102592498 |
Publications ? help Back to Top | |||
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