PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400053330 | ||||||||
Common Name | LOC102592498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 151aa MW: 16795 Da PI: 9.8361 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.3 | 1.5e-14 | 70 | 117 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +Er+RR+r+ ++f L +l+P++ kKl+Ka++L A++YIk+L+ PGSC0003DMP400053330 70 QDHVLAERKRRERLTQRFIALSTLIPNL-----KKLDKATVLGDAIQYIKQLE 117 56999***********************.....9*****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.961 | 67 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.0E-12 | 70 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-18 | 71 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-18 | 72 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.74E-13 | 72 | 121 | No hit | No description |
SMART | SM00353 | 6.0E-16 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MPAKNQFENL NTFKVVKREV PSGTTINFSS SVNSMDDSDF GDIEAMRFGA AVTTTTDQKK 60 SYNRTSVQAQ DHVLAERKRR ERLTQRFIAL STLIPNLKKL DKATVLGDAI QYIKQLEEQV 120 KTLEEKNKPE IPAAKRPRLV SSCDDSSSSG * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 3e-14 | 71 | 126 | 8 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 80 | ERKRRE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400053330 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-126 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006357857.2 | 1e-107 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_015169068.1 | 1e-107 | PREDICTED: transcription factor bHLH18-like | ||||
Refseq | XP_015169069.1 | 1e-107 | PREDICTED: transcription factor bHLH18-like | ||||
Swissprot | Q9T072 | 2e-23 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | M1D0K2 | 1e-106 | M1D0K2_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1D0K3 | 1e-105 | M1D0K3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078698 | 1e-106 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-25 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400053330 |
Entrez Gene | 102592498 |
Publications ? help Back to Top | |||
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