PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053329
Common NameLOC102584980
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 348aa    MW: 39529.7 Da    PI: 6.8511
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053329genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13167212454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h ++Er+RR+++ ++f  L  +lP++     kK++Ka+iLe+A++++k+L
  PGSC0003DMP400053329 167 HHIIAERKRREKLSQRFVALSAILPSL-----KKVDKASILEQAIKHVKEL 212
                           799************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.116163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-12166217No hitNo description
PfamPF000101.5E-10166212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.5E-16167230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-16167231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-12169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDNSSLSQWF SRTEEGVFNS NKNTSIDDFT TQKSTISEDQ ETSELSITPD STRANSRSYF  60
HQEISKSKSK ITPMENFPIG SKRPAIDDDH QPKLNKISSS SHRFLSFNNN MDSVFPSHQG  120
CKIEAVDEMY LCDSSDQMFF PYVKSNGCYD VKDKEGGKRI PSVELQHHII AERKRREKLS  180
QRFVALSAIL PSLKKVDKAS ILEQAIKHVK ELKEKVQLLE EEKKSGPSQQ NSVMFVNKSK  240
LEIEEYSSSE ENNNNIGSDL RVDIEVRYSD NNVLIRITCA RSNAFVLNIH NEIEKLHLTI  300
LQSCMMPFGK QAIDITLVAQ MDESFCMTLK DVAKHVRMVT GRLMTQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-11167242883Transcription factor MYC2
5gnj_B1e-11167242883Transcription factor MYC2
5gnj_E1e-11167242883Transcription factor MYC2
5gnj_F1e-11167242883Transcription factor MYC2
5gnj_G1e-11167242883Transcription factor MYC2
5gnj_I1e-11167242883Transcription factor MYC2
5gnj_M1e-11167242883Transcription factor MYC2
5gnj_N1e-11167242883Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053329
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-158HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357746.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0724e-41BH025_ARATH; Transcription factor bHLH25
TrEMBLM1D0K10.0M1D0K1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000786960.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA136021316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-32bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]