PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400053022
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 668aa    MW: 75177.2 Da    PI: 6.1264
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400053022genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.41.8e-1082936632374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                           ++lL++cAea +s + +   ++L++++e++sp gd++ Rla +f++AL+ar a+ ++ +   +++++    +s++ l+a++++  ++P+
  PGSC0003DMP400053022 293 TSLLTRCAEAAASYNSKTFIEVLKKIREHSSPFGDATSRLAYCFANALEARFAG-GDAT--LITSKK---ISSADFLKAYQVYITACPF 375
                           689***************************************************.2222..233333...4499*************** PP

                  GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfe 177
                            ++s++ aN+ I + +++++r+HiiDf+i +G+QWp++++ ++ Rp+gpp+l+iTg++ p++g   +e++eetg+rL++++++++vpfe
  PGSC0003DMP400053022 376 KRMSNIFANKSIAKLTSESSRIHIIDFGILYGFQWPCIIHGISLRPGGPPKLKITGIDFPQPGfrPAERVEETGRRLKDYCKRFDVPFE 464
                           **************************************************************9************************** PP

                  GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                           +++ +ak++++++le+L+++++E ++Vn+ ++l++++de+v +++   +rd+vL+l+k+++P+ +v+   +a +n++ F +rf eal +
  PGSC0003DMP400053022 465 YKA-IAKKWDEITLEDLDIDRDEIVVVNCLYRLKNVPDETVVTHNnknPRDAVLNLIKEINPHYFVHGIVNAMYNASFFTTRFREALFH 552
                           ***.7**********************************9877766679**************************************** PP

                  GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                           +s+ fd++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW++r + aGF+++pl+++++k++k+ +++++   + v+
  PGSC0003DMP400053022 553 FSSQFDMFEATMPREDEGRMTFEQEVFGRDIMNVIASEGAERVERPESFKKWSMRNQIAGFRQLPLDQDIVKEVKTKVKMFYHADFLVD 641
                           **********************************************************************************888**** PP

                  GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                           e+s+++++gWk+r ++++S+W+
  PGSC0003DMP400053022 642 EDSNWMLQGWKGRIMYALSVWE 663
                           *********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.863266643IPR005202Transcription factor GRAS
PfamPF035146.2E-106293663IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MNTGSHFPGD HRSSDGFEFC HRFGGGGGGG GGVNDVLCFS SRRPSEEEVV IGSGSDRTVV  60
QGDYFDGVFK YIHQMLMEDQ EDLENRPCMF QDCIALQAAE KSFYDALNPP PIHHDFVDDS  120
GNQFQDDYCD AVNQFVETTF NSDLDADQCS LFYNTNICQG VGDGISVVNG GASNAINYHQ  180
VNDVNQGGIP SSDGNKKHTR DENNDSSKGR KSKQLASNGT EETEDGKTEE HYDKALLCPG  240
LNPSFYENRS KSATASDNAA WDKQKSSHIK QSKRGRPRGS KKGVKTNEVV DLTSLLTRCA  300
EAAASYNSKT FIEVLKKIRE HSSPFGDATS RLAYCFANAL EARFAGGDAT LITSKKISSA  360
DFLKAYQVYI TACPFKRMSN IFANKSIAKL TSESSRIHII DFGILYGFQW PCIIHGISLR  420
PGGPPKLKIT GIDFPQPGFR PAERVEETGR RLKDYCKRFD VPFEYKAIAK KWDEITLEDL  480
DIDRDEIVVV NCLYRLKNVP DETVVTHNNK NPRDAVLNLI KEINPHYFVH GIVNAMYNAS  540
FFTTRFREAL FHFSSQFDMF EATMPREDEG RMTFEQEVFG RDIMNVIASE GAERVERPES  600
FKKWSMRNQI AGFRQLPLDQ DIVKEVKTKV KMFYHADFLV DEDSNWMLQG WKGRIMYALS  660
VWEPIHK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-452926625374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400053022
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350886.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE581e-159SCL14_ARATH; Scarecrow-like protein 14
TrEMBLM1CZT40.0M1CZT4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000782860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-160GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]