PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052918
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 321aa    MW: 34652.1 Da    PI: 9.2876
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052918genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.5e-3868127362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+ lkcprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  PGSC0003DMP400052918  68 EAGLKCPRCDSTNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 127
                           6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-3651120IPR003851Zinc finger, Dof-type
PfamPF027013.6E-3270125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.58171125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MVFSSFPVYL DHPNLHQLQQ PDGHQQGNTG LENPTLQPPP MQVGASPGSI RPGSMVDRAR  60
LAKIPLPEAG LKCPRCDSTN TKFCYFNNYN LSQPRHFCKT CRRYWTRGGA LRSVPVGGGC  120
RRNKRSKSSN NNNSSKIAGS NVNTNTIASG TSTSASPSSC STEIMNGRHH FPHEQPPQLN  180
PLMAAFQNLN HHYGGFQSPP LVSTHHGNGT GSLGHHHEMG FQIGSNTNNT NNLPVPSGGG  240
SDHQWRLPSL AANTNLYPFQ HGTESSSVNN NNINAHDDQG LNSTKQFLGT MENNTNQYWG  300
GNAWTGFSGL NSSSSASHLL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052918
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2428530.0AJ242853.1 Solanum tuberosum mRNA for Dof zinc finger protein (dof1 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305545.10.0dof zinc finger protein DOF3.6
TrEMBLM1CZI40.0M1CZI4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000781640.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.11e-44OBF-binding protein 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]