PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052826
Common NameLOC102584517
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 308aa    MW: 34764.9 Da    PI: 9.4544
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052826genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.5e-082468345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          +WT+ E + + da +++ ++   +W+++a++++ g++  ++   + 
  PGSC0003DMP400052826 24 KWTPAENKAFEDALALFDKDtpdRWHRVAEMVP-GKSVVDVMRQYK 68
                          8********************************.****99988775 PP

2Myb_DNA-binding47.54.2e-15131175347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  PGSC0003DMP400052826 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                           7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3282073IPR017884SANT domain
SMARTSM007178.4E-102173IPR001005SANT/Myb domain
SuperFamilySSF466892.3E-112378IPR009057Homeodomain-like
CDDcd001671.66E-72470No hitNo description
PfamPF002491.2E-62468IPR001005SANT/Myb domain
PROSITE profilePS5129419.89124180IPR017930Myb domain
SuperFamilySSF466895.31E-17125179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17127179IPR006447Myb domain, plants
SMARTSM007172.5E-12128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-12129175IPR009057Homeodomain-like
CDDcd001671.61E-11131176No hitNo description
PfamPF002499.8E-13131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEILSPAPYL SNPSWFLDED KSTKWTPAEN KAFEDALALF DKDTPDRWHR VAEMVPGKSV  60
VDVMRQYKEL EDDVSRIEAG LVTIPGYSTS PFTLEWGNSH SFDGYKQSYV VGGKRPLSNR  120
PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTINLN DNQTLSPDYQ KPTSPDQSTM ISQQPKSTAN AMHKMPFQWS  240
QVNNGTATGF NSAQASLFMS PALYGGNSYG NTKMLSQSLQ RGAMHEPYFG AQSMNFQLQS  300
AHQYHQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-1425901176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052826
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350823.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-143DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM1CZ980.0M1CZ98_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000780290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-101Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]