PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400052826 | ||||||||
Common Name | LOC102584517 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 308aa MW: 34764.9 Da PI: 9.4544 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.4 | 6.5e-08 | 24 | 68 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + da +++ ++ +W+++a++++ g++ ++ + PGSC0003DMP400052826 24 KWTPAENKAFEDALALFDKDtpdRWHRVAEMVP-GKSVVDVMRQYK 68 8********************************.****99988775 PP | |||||||
2 | Myb_DNA-binding | 47.5 | 4.2e-15 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky PGSC0003DMP400052826 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.328 | 20 | 73 | IPR017884 | SANT domain |
SMART | SM00717 | 8.4E-10 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.3E-11 | 23 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.66E-7 | 24 | 70 | No hit | No description |
Pfam | PF00249 | 1.2E-6 | 24 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.89 | 124 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.31E-17 | 125 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 127 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.5E-12 | 128 | 178 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-12 | 129 | 175 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-11 | 131 | 176 | No hit | No description |
Pfam | PF00249 | 9.8E-13 | 131 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MEILSPAPYL SNPSWFLDED KSTKWTPAEN KAFEDALALF DKDTPDRWHR VAEMVPGKSV 60 VDVMRQYKEL EDDVSRIEAG LVTIPGYSTS PFTLEWGNSH SFDGYKQSYV VGGKRPLSNR 120 PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL 180 SGGKDKRRAS IHDITTINLN DNQTLSPDYQ KPTSPDQSTM ISQQPKSTAN AMHKMPFQWS 240 QVNNGTATGF NSAQASLFMS PALYGGNSYG NTKMLSQSLQ RGAMHEPYFG AQSMNFQLQS 300 AHQYHQA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-14 | 25 | 90 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400052826 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350823.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-143 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M1CZ98 | 0.0 | M1CZ98_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400078029 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 1e-101 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400052826 |
Entrez Gene | 102584517 |
Publications ? help Back to Top | |||
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