PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400052781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 62aa MW: 6949.98 Da PI: 8.4664 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 35.3 | 1.6e-11 | 2 | 56 | 13 | 67 |
GRAS 13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalpps 67 ++ d++ a+ L+ ++ ++sp+g++++R+a+yf+ AL+arla+++ ely a++ + PGSC0003DMP400052781 2 ANYDTRIAHDKLKLIRLHCSPYGEATERMAHYFADALEARLAGTGIELYTAFAKR 56 567999***************************************9999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.48 | 1 | 61 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.3E-9 | 2 | 56 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
MANYDTRIAH DKLKLIRLHC SPYGEATERM AHYFADALEA RLAGTGIELY TAFAKRTILS 60 Y* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400052781 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165701.1 | 4e-37 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9 | ||||
TrEMBL | M1CZ56 | 8e-37 | M1CZ56_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400077973 | 1e-37 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17136 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 8e-17 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400052781 |
Publications ? help Back to Top | |||
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