PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400052780

Common Name

LOC102599068

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

GRAS

Protein Properties

Length: 753aa MW: 85164.8 Da PI: 5.5308

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400052780	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	358	1.4e-109	378	749	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lL++cA+ v+++d + a + L+++++++ + gd+ qRla++f+ +L+arla+++++ly+al+p++ + +e+l+a++++ ++P PGSC0003DMP400052780 378 LRTLLVSCAQSVAADDRRTAYEQLKQIRQHCFSIGDAYQRLASVFADGLEARLAGTGTQLYAALAPKKIT---AAEKLKAYQVYLSACP 463 6789**************************************************************99...9*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 + k+s + aN++I +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRiTg++ p++g +e+le+tg+rLak++e+++vpf PGSC0003DMP400052780 464 FKKISIFFANKMIFHTASNARTLHLIDFGILYGFQWPILIQLLSEIPDGPPKLRITGIDLPQPGfrPAESLEQTGSRLAKYCERFKVPF 552 ***********************************************************9********************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 e+n+++++++e+++le+L++ +gE++aVn+ ++ ++llde+v l+s+rd+vL l+++++P+++v + + +++++ F++rf eal +ys PGSC0003DMP400052780 553 EYNAIATQNWENIKLEDLKLVSGETVAVNCLFRFKNLLDETVMLDSPRDAVLGLIRKMNPDIFVQAVINGSYSAPFFVTRFREALFHYS 641 *999***************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 +lfd+++a+lpr++++r E+e+ +re++nv+aceg+er+er et+++W+ r ++aGFk +pl+++ +++ ++ ++ + + + +e+ PGSC0003DMP400052780 642 TLFDMFDATLPRDDQQRLHFEQEFYRREAMNVIACEGSERVERPETYKQWQVRNMRAGFKILPLNQQLVQKLRCKVKAGYHRDFVFNED 730 **************************************************************************99999** PP GRAS 355 sgslvlgWkdrpLvsvSaW 373 +++++gWk+r + + S+W PGSC0003DMP400052780 731 GKWMLQGWKGRVVCASSCW 749 ***************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.334	352	730	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-107	378	749	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009410	Biological Process	response to xenobiotic stimulus
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol

Sequence ? help Back to Top
Protein Sequence Length: 753 aa Download sequence Send to blast
MDPRFIPLSD PVNTLEFEDQ INLSSYEGSL NPPHSYNDDY VAFGVPYTAP SVDIGNFPPS 60 SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKSYP 120 PSPYRTPYHV DHQFKSPSPD SIFQTSSDHS TSSSNAHSNS MDPHWIVDPG ESRLPLPVES 180 HPSEYSIQPL MQSNSERSHG SLNNINNLNV HMDSFLNPNA LSNMFTDSES ILQFKRGVEE 240 ANKFLPNVSQ FVVDLDKYTF PPKVEEVTKE AVVKVEKDER NHSPNGTKGR KHQYPEDSDF 300 EDERSNKHSA IYVEEEAELS EMFDRVLLCT DKGETICGDV KSEMPVDNSL DQNGQAHGSN 360 GGKTRAKKQG TKNEAVDLRT LLVSCAQSVA ADDRRTAYEQ LKQIRQHCFS IGDAYQRLAS 420 VFADGLEARL AGTGTQLYAA LAPKKITAAE KLKAYQVYLS ACPFKKISIF FANKMIFHTA 480 SNARTLHLID FGILYGFQWP ILIQLLSEIP DGPPKLRITG IDLPQPGFRP AESLEQTGSR 540 LAKYCERFKV PFEYNAIATQ NWENIKLEDL KLVSGETVAV NCLFRFKNLL DETVMLDSPR 600 DAVLGLIRKM NPDIFVQAVI NGSYSAPFFV TRFREALFHY STLFDMFDAT LPRDDQQRLH 660 FEQEFYRREA MNVIACEGSE RVERPETYKQ WQVRNMRAGF KILPLNQQLV QKLRCKVKAG 720 YHRDFVFNED GKWMLQGWKG RVVCASSCWV PA*

Sequence ? help Back to Top

Protein Sequence Length: 753 aa Download sequence Send to blast

MDPRFIPLSD PVNTLEFEDQ INLSSYEGSL NPPHSYNDDY VAFGVPYTAP SVDIGNFPPS  60
SNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKSYP  120
PSPYRTPYHV DHQFKSPSPD SIFQTSSDHS TSSSNAHSNS MDPHWIVDPG ESRLPLPVES  180
HPSEYSIQPL MQSNSERSHG SLNNINNLNV HMDSFLNPNA LSNMFTDSES ILQFKRGVEE  240
ANKFLPNVSQ FVVDLDKYTF PPKVEEVTKE AVVKVEKDER NHSPNGTKGR KHQYPEDSDF  300
EDERSNKHSA IYVEEEAELS EMFDRVLLCT DKGETICGDV KSEMPVDNSL DQNGQAHGSN  360
GGKTRAKKQG TKNEAVDLRT LLVSCAQSVA ADDRRTAYEQ LKQIRQHCFS IGDAYQRLAS  420
VFADGLEARL AGTGTQLYAA LAPKKITAAE KLKAYQVYLS ACPFKKISIF FANKMIFHTA  480
SNARTLHLID FGILYGFQWP ILIQLLSEIP DGPPKLRITG IDLPQPGFRP AESLEQTGSR  540
LAKYCERFKV PFEYNAIATQ NWENIKLEDL KLVSGETVAV NCLFRFKNLL DETVMLDSPR  600
DAVLGLIRKM NPDIFVQAVI NGSYSAPFFV TRFREALFHY STLFDMFDAT LPRDDQQRLH  660
FEQEFYRREA MNVIACEGSE RVERPETYKQ WQVRNMRAGF KILPLNQQLV QKLRCKVKAG  720
YHRDFVFNED GKWMLQGWKG RVVCASSCWV PA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-43	361	751	1	379	Protein SCARECROW
5b3h_D	7e-43	361	751	1	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400052780

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006350781.1	0.0	PREDICTED: scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	M1CZ55	0.0	M1CZ55_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400077972	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400052780
Entrez Gene	102599068

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]