PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052622
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 203aa    MW: 22934.1 Da    PI: 9.6035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052622genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-20556156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                          +++kGVr++  +g+Wv+eIr+p        kr++lg+f taeeAa+a+++a+  ++g+
  PGSC0003DMP400052622  5 KKFKGVRQRQ-WGSWVSEIRHP-----LlkKRIWLGTFETAEEAARAYDEAAILMNGH 56
                          59*****999.**********8.....335**********************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.56E-34565No hitNo description
PROSITE profilePS5103221.325663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-31663IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-20664IPR016177DNA-binding domain
PfamPF008471.6E-12656IPR001471AP2/ERF domain
SMARTSM003809.9E-38669IPR001471AP2/ERF domain
PRINTSPR003672.5E-10718IPR001471AP2/ERF domain
PRINTSPR003672.5E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MVQSKKFKGV RQRQWGSWVS EIRHPLLKKR IWLGTFETAE EAARAYDEAA ILMNGHVAKT  60
NFPIVKESTV NNNGTNDKKF PLTSSSTLSS TVLNAKLRKC CKHPAPSMTC LRLDNDNCHI  120
GVWQKRSGKH SGSNWITKIE LGKKEEKPHD HQNMNSELGI SKPLDEENRI AMQMVEELLN  180
WNSPFSHEPI TDHLSPSFSN SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-17564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052622
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306131.11e-128ethylene-responsive transcription factor SHINE3
SwissprotQ3E9586e-71SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLM1CYS61e-149M1CYS6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000777021e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13522476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.27e-60ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  3. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]