PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052339
Common NameLOC102580242
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 391aa    MW: 43483.1 Da    PI: 6.9426
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052339genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-171151343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          ien+s r+v++ kR +g lKKA+ELS+LCd+e+a +i s+ 
  PGSC0003DMP400052339 11 IENESDRKVSYKKREKGFLKKAHELSTLCDVEIAAVIDSPY 51
                          9*********************************9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.895147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-21395IPR002100Transcription factor, MADS-box
CDDcd002661.04E-23384No hitNo description
PRINTSPR004048.2E-12323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-161157IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MPRNKVKLAL IENESDRKVS YKKREKGFLK KAHELSTLCD VEIAAVIDSP YNNEPTVFPN  60
YDAAINTFVK FKELPTLEKS KNMVTREEFT KKRIEKMEEK LLKVRKQNRL KEITNEMYEV  120
TRGKDISPNM DPYDFNDLSY MIKKNLIQIR EAMNGEEVCT SNVPQPIVEP IIIGGTNSEG  180
SKATLLATAG SLLPMIPLES PSMVPGGTNF EKTRPPLFVP NVAPPTVPLS ASPKVTQQMV  240
HLADPSRTPI QMVPLMDTSQ VNPSPIFSSQ IFPPMVPYLF STIPQQMAIR RTPGMAFSMP  300
SATMSSLMPS PMIAPPVCSP LTSQMDPSTD LPPMGASMLI NNHQNYTANR PQSPSLSELL  360
NWNNDDVVTL LEDPSLHNIN VQDPNRSNNT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052339
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341870.10.0PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM1CY430.0M1CY43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000772580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13291040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.15e-30AGAMOUS-like 38
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]