PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400052315
Common NameLOC102588048
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family G2-like
Protein Properties Length: 382aa    MW: 43623.1 Da    PI: 8.7261
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400052315genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.5e-3277130255
               G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                           prlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ+YR+
  PGSC0003DMP400052315  77 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQFMNIKGLSIAHVKSHLQMYRS 130
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-3073131IPR009057Homeodomain-like
PROSITE profilePS5129412.91773133IPR017930Myb domain
SuperFamilySSF466895.38E-1674132IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-2377132IPR006447Myb domain, plants
PfamPF002496.8E-1078129IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MKGGSSSSTE DSKSNPKNQI EFEEEEEEEE EEDDIETEEN SKAQGTTRSS SSNSTVEENG  60
KKTNSASVRQ YVRSKTPRLR WTPELHLRFV HAVERLGGQD RATPKLVLQF MNIKGLSIAH  120
VKSHLQMYRS KKTDDPNQIS TDGRFLLENG DHHIFNLTQL PRLQGFNQTS SSSLRYDNAL  180
WNRQANSLYN PYNMNIGVGS SISTRHGFAS HINGHSSHEH LFSWNKNIEI EKNQNRHNQR  240
FWPPTQIGTS SAKQNLLMTY RDKDEIVKQF NRRSSEQEMM TQIRTKENNS LTSRGKWWMR  300
EEVVGTTTNT SSSNKRKIQD SEMDLDLNLS LKTTREYHQK RLKGEQVGDL LSLSLFSSST  360
TTTTTSEENN AKKASTLDLT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-1678132357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-1678132458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400052315
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353444.10.0PREDICTED: putative two-component response regulator ARR21 isoform X2
TrEMBLM1CY220.0M1CY22_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000772170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85732129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.17e-50G2-like family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]