PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400052314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 159aa MW: 18070.2 Da PI: 6.3684 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 93.6 | 1.6e-29 | 77 | 126 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH rFv+ave+LGG+++AtPk +l++m++kgL+++hvkSHLQ PGSC0003DMP400052314 77 PRLRWTPELHLRFVHAVERLGGQDRATPKLVLQFMNIKGLSIAHVKSHLQ 126 8************************************************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.047 | 73 | 136 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.7E-27 | 73 | 126 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.49E-14 | 74 | 128 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-20 | 77 | 126 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.1E-9 | 78 | 127 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence Send to blast |
MKGGSSSSTE DSKSNPKNQI EFEEEEEEEE EEDDIETEEN SKAQGTTRSS SSNSTVEENG 60 KKTNSASVRQ YVRSKTPRLR WTPELHLRFV HAVERLGGQD RATPKLVLQF MNIKGLSIAH 120 VKSHLQTEDF YLRMEIIIFS ILHNFLGYKG LIKLRVRA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-17 | 78 | 126 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-17 | 78 | 126 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-17 | 78 | 126 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-17 | 78 | 126 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-17 | 78 | 126 | 4 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400052314 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-87 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015166810.1 | 1e-83 | PREDICTED: putative two-component response regulator ARR21 isoform X1 | ||||
TrEMBL | M1CY21 | 1e-112 | M1CY21_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400077217 | 5e-83 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38300.1 | 1e-36 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400052314 |
Publications ? help Back to Top | |||
---|---|---|---|
|