PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400052018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 144aa MW: 16903.2 Da PI: 8.6896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 79 | 113 | 1 | 37 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS- CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskK 37 ++ +hn+ Er+RR+++N +++Lr+llP+ + +++K PGSC0003DMP400052018 79 KKLNHNASERNRRKKMNFLYSTLRSLLPPtN---KHQK 113 6789*************************55...5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-9 | 78 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-7 | 78 | 114 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-9 | 78 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.007 | 78 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-8 | 79 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MNSIGWSFEE PLSYDDYQKN KTTITTPQFQ TDQTNKLFEG LRVDNTIDLP SSHHHQQQCL 60 KESEFDVDEL GVERSLMEKK LNHNASERNR RKKMNFLYST LRSLLPPTNK HQKTQGPNEM 120 DIQILKMKLL VMCEKRKKES YIV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400052018 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-145 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-145 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249750.2 | 5e-69 | transcription factor bHLH100 | ||||
Refseq | XP_015055301.1 | 6e-69 | transcription factor bHLH100-like | ||||
TrEMBL | M1CXD1 | 1e-102 | M1CXD1_SOLTU; Uncharacterized protein | ||||
STRING | XP_009779323.1 | 3e-21 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04150.1 | 2e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400052018 |
Publications ? help Back to Top | |||
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