PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051791
Common NameLOC102583952
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 399aa    MW: 43798.3 Da    PI: 7.9166
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051791genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.5e-3958116462
                zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                            +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ +
  PGSC0003DMP400051791  58 PHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 116
                           5789****************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.1E-3359114IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.52560114IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-2860114IPR003851Zinc finger, Dof-type
PROSITE patternPS0136106298IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVGECDQKMV LISSSTTNQI WPQIDEKNNL MMDSNGTNAT SNNMEKPIQD PSQQPPPPHL  60
KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR KNKRIKRPSV  120
NSSSSTTTTS HDIITTSTPN IVNPSHHHQL HGVHHNNNID HLSTTNSPNH LNPLFYGLTS  180
ERSDLNIPFS RLFNSRVSSH GGGVDEGQVY SITDSIPGLM DRRMGLGFSN SSGGVVNMGH  240
ENNNNYGHGG LYPIKQIQDV HVMSTSNSTT STTSLLSSYP NMFGSSSSTS TMASLIASSL  300
QQQKFMSNIN GNNFHNLLTP NYEELQMSRG NNNNNNNTIN NVHEGGGNGN TMLKEEKMDL  360
SNHQIHEQII NSSDPSLSWN GAWLDPSNMG SNSVPSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347015.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLM1CWS80.0M1CWS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764470.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.15e-36Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]