PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051790
Common NameLOC102583952
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 368aa    MW: 40262.2 Da    PI: 8.39
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051790genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.85.7e-392785462
                zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                           +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ +
  PGSC0003DMP400051790 27 PHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 85
                          5789****************************************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.8E-332883IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-272983IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.5252983IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103167IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDSNGTNATS NNMEKPIQDP SQQPPPPHLK CPRCDSSNTK FCYYNNYSLS QPRHFCKACK  60
RYWTRGGTLR NVPVGGGCRK NKRIKRPSVN SSSSTTTTSH DIITTSTPNI VNPSHHHQLH  120
GVHHNNNIDH LSTTNSPNHL NPLFYGLTSE RSDLNIPFSR LFNSRVSSHG GGVDEGQVYS  180
ITDSIPGLMD RRMGLGFSNS SGGVVNMGHE NNNNYGHGGL YPIKQIQDVH VMSTSNSTTS  240
TTSLLSSYPN MFGSSSSTST MASLIASSLQ QQKFMSNING NNFHNLLTPN YEELQMSRGN  300
NNNNNNTINN VHEGGGNGNT MLKEEKMDLS NHQIHEQIIN SSDPSLSWNG AWLDPSNMGS  360
NSVPSLI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051790
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347015.10.0PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBLM1CWS80.0M1CWS8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000764470.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.15e-36Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]