PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051771 | ||||||||
Common Name | LOC102593239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LSD | ||||||||
Protein Properties | Length: 392aa MW: 42579.5 Da PI: 4.4039 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.5 | 5.1e-14 | 302 | 326 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYP GA++V+C++C+tV PGSC0003DMP400051771 302 CGGCRQLLSYPQGAKLVKCSCCQTV 326 ************************9 PP | |||||||
2 | zf-LSD1 | 44.4 | 2.7e-14 | 340 | 364 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ PGSC0003DMP400051771 340 CGGCAVLLMYPYGAPSVRCSSCRHM 364 **********************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 9.8E-17 | 299 | 329 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.3E-11 | 302 | 326 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 6.6E-10 | 337 | 365 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.6E-12 | 340 | 363 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MEEKLSNIEN QQVDDEEEDE GPPPGFDSLA VPSQNTNVVI DEDDDEGPPP GWSSIPQQHN 60 LQTTDVEMGG KEHKSEDDED GPPPGWNTVI PQKKLPSLPP TIEAVTCDID MEKKEEIIKN 120 EDNGPPPRWQ LTPKLLPLQT STPPSGTQGA SLEDIEMEKK EEAVEDEDNG PPPGWQLTPQ 180 LLPLQTSTSP SGIQGVPLAA FVDVEMASNQ DCDVEKEGHP LGLESVPMNG HSSPPTPPPQ 240 SSSSVASSEM EMGRKQEGTK NEEERPQIEK QPMSHLLQMK PIVPQASSHA ATVSSEMGQM 300 VCGGCRQLLS YPQGAKLVKC SCCQTVNLVL EAHEVGQVKC GGCAVLLMYP YGAPSVRCSS 360 CRHMTKIGAH NRRPPQSVQQ PRRRHPSYQV H* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051771 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226513 | 9e-78 | AC226513.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0005F12, complete sequence. | |||
GenBank | HG975514 | 9e-78 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347044.1 | 0.0 | PREDICTED: uncharacterized protein LOC102593239 isoform X4 | ||||
TrEMBL | M1CWQ8 | 0.0 | M1CWQ8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076422 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11642 | 22 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 3e-31 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051771 |
Entrez Gene | 102593239 |
Publications ? help Back to Top | |||
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