PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400051770 | ||||||||
Common Name | LOC102593239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 143aa MW: 15755.3 Da PI: 9.2137 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.5 | 1.3e-14 | 53 | 77 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCr lLsYP GA++V+C++C+tV PGSC0003DMP400051770 53 CGGCRQLLSYPQGAKLVKCSCCQTV 77 ************************9 PP | |||||||
2 | zf-LSD1 | 46.3 | 6.8e-15 | 91 | 115 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ PGSC0003DMP400051770 91 CGGCAVLLMYPYGAPSVRCSSCRHM 115 **********************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.2E-17 | 50 | 80 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.3E-12 | 53 | 77 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-10 | 88 | 116 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-12 | 91 | 114 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MEMGRKQEGT KNEEERPQIE KQPMSHLLQM KPIVPQASSH AATVSSEMGQ MVCGGCRQLL 60 SYPQGAKLVK CSCCQTVNLV LEAHEVGQVK CGGCAVLLMY PYGAPSVRCS SCRHMTKIGA 120 HNRRPPQSVQ QPRRRHPSYQ VH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400051770 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 3e-66 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347044.1 | 1e-100 | PREDICTED: uncharacterized protein LOC102593239 isoform X4 | ||||
Swissprot | O65426 | 7e-36 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | M1CWQ8 | 6e-99 | M1CWQ8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076422 | 1e-99 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21610.1 | 9e-34 | lsd one like 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400051770 |
Entrez Gene | 102593239 |
Publications ? help Back to Top | |||
---|---|---|---|
|