PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051750
Common NameLOC102584268
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 286aa    MW: 31060.1 Da    PI: 9.9194
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051750genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.43.3e-383490561
                zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                           +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k++
  PGSC0003DMP400051750 34 LQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 90
                          679**************************************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-252389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8633589IPR003851Zinc finger, Dof-type
PfamPF027011.4E-323589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEDQLGGRSS GENDRNRRMK MPENNSSSPA QPPLQKCPRC DSNNTKFCYY NNYSLTQPRY  60
FCKTCRRYWT QGGTLRNVPV GGGCRKGKRT MKGGGSSSSA GESSSRSHHQ ILHPPQIPNL  120
SAAFFSGNNS RSQPPPLPSM SSLYTGGGGF LSSLAAMQSL SQLSQGINNQ SQLGLVSGSN  180
NNNNQFGNFN IPTPPPPPKV QISQQMESTG FYQKPNLESS FYPSDQTLQF QPTRPLGSWT  240
QRFINNNNNN NIWQNSSASS SSAAGASLDP NDHQWPDLPG FGPSP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051750
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347016.10.0PREDICTED: dof zinc finger protein DOF3.1-like
TrEMBLM1CWN80.0M1CWN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000763970.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.12e-33TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]