PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051750 | ||||||||
Common Name | LOC102584268 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | Dof | ||||||||
Protein Properties | Length: 286aa MW: 31060.1 Da PI: 9.9194 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.4 | 3.3e-38 | 34 | 90 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ PGSC0003DMP400051750 34 LQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 90 679**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 23 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.863 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.4E-32 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MEDQLGGRSS GENDRNRRMK MPENNSSSPA QPPLQKCPRC DSNNTKFCYY NNYSLTQPRY 60 FCKTCRRYWT QGGTLRNVPV GGGCRKGKRT MKGGGSSSSA GESSSRSHHQ ILHPPQIPNL 120 SAAFFSGNNS RSQPPPLPSM SSLYTGGGGF LSSLAAMQSL SQLSQGINNQ SQLGLVSGSN 180 NNNNQFGNFN IPTPPPPPKV QISQQMESTG FYQKPNLESS FYPSDQTLQF QPTRPLGSWT 240 QRFINNNNNN NIWQNSSASS SSAAGASLDP NDHQWPDLPG FGPSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051750 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006347016.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
TrEMBL | M1CWN8 | 0.0 | M1CWN8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400076397 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 2e-33 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051750 |
Entrez Gene | 102584268 |
Publications ? help Back to Top | |||
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