PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400051398 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 144aa MW: 15711.7 Da PI: 8.0888 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.6 | 4.6e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C ++F ++ L rH++ H PGSC0003DMP400051398 83 FSCNFCRRMFYSSQALGRHQNAH 105 89******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.3E-4 | 81 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.35E-7 | 81 | 111 | No hit | No description |
PROSITE profile | PS50157 | 11.697 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MKPSNFNLES EDESKVSNCQ VGSNISVQEI RPGPSLNLQQ ESVPITLDLT LGFNSSDSEL 60 KTNGEASDEV VPHPPTAALS RVFSCNFCRR MFYSSQALGR HQNAHKRERT LANRAMRMGM 120 LSDRYASLAS LPLHGAAFRS LGV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400051398 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006355049.1 | 2e-93 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167649.1 | 2e-93 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167650.1 | 2e-93 | PREDICTED: zinc finger protein 4-like | ||||
Refseq | XP_015167651.1 | 2e-93 | PREDICTED: zinc finger protein 4-like | ||||
TrEMBL | M1CVW3 | 1e-101 | M1CVW3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400075890 | 1e-102 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 5e-22 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400051398 |
Publications ? help Back to Top | |||
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