PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051285
Common NameBBR/BPC1
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 282aa    MW: 30999.5 Da    PI: 10.1707
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051285genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind336.47.5e-10312811301
             GAGA_bind   1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernkalve 76 
                           mdddg + rn+gyyep+  lk +lglqlmss+ +rdak+   r +n  + + ++++++rd          +++  rd+++++       
  PGSC0003DMP400051285   1 MDDDGLNMRNWGYYEPS--LKGHLGLQLMSSMVDRDAKPyltRRENPIMLGANGVFHSRDsiipeaplshIDY-VRDSWINH------- 79 
                           9*****99*******99..**********************9777888*******************999999.99****99....... PP

             GAGA_bind  77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpie.eaaeeakekkkkkkrqrakkpkekka 164
                            ++k+l++ +         +++++vl++++    +q++++p+++++a             ++ e+++++ke+  +k++  +++pk++ka
  PGSC0003DMP400051285  80 -RDKFLHMFPG--------SPYTSVLPDASASTPMQMVQQPDTTKDA------------GVNaEEPSVKKESGPSKRKTGGATPKAPKA 147
                           .7899999993........4678899999999999995444333322............222033455666666777777899****** PP

             GAGA_bind 165 kkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                           kk kk s+++k++ ++++   r+k  kks+d+vlng+++D+s +P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+stkrrga
  PGSC0003DMP400051285 148 KKSKKVSSTPKENGNPSQ---RAKPAKKSMDIVLNGIDMDISVIPIPVCSCTGSPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGA 233
                           *****9988877776665...89****************************************************************** PP

             GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           RiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
  PGSC0003DMP400051285 234 RIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWAKHGTNKFVTIR 281
                           ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.4E-1651281IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-1141281IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDDDGLNMRN WGYYEPSLKG HLGLQLMSSM VDRDAKPYLT RRENPIMLGA NGVFHSRDSI  60
IPEAPLSHID YVRDSWINHR DKFLHMFPGS PYTSVLPDAS ASTPMQMVQQ PDTTKDAGVN  120
AEEPSVKKES GPSKRKTGGA TPKAPKAKKS KKVSSTPKEN GNPSQRAKPA KKSMDIVLNG  180
IDMDISVIPI PVCSCTGSPQ QCYRWGCGGW QSACCTTSIS MYPLPMSTKR RGARIAGRKM  240
SQGAFKKVLE KLAAEGYNFA NPIDLRTHWA KHGTNKFVTI R*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400051285
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823120.0FJ982312.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275629.10.0protein BASIC PENTACYSTEINE2-like
SwissprotQ9SKD01e-106BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLH1ZN950.0H1ZN95_SOLTU; GAGA-binding transcriptional activator
STRINGPGSC0003DMT4000757040.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90612429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.23e-99basic pentacysteine1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]