PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050832
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 292aa    MW: 32360.1 Da    PI: 7.9978
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050832genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.6e-391676262
                zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                          +++ +kcprCds+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ss
  PGSC0003DMP400050832 16 HDEVQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKQRSS 76
                          57889****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-26569IPR003851Zinc finger, Dof-type
PfamPF027012.8E-331874IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.7892074IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102258IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MLACTKPQQE KKPRPHDEVQ KCPRCDSANT KFCYYNNYSL TQPRYFCKSC RRYWTKGGTL  60
RNVPVGGGCR KKQRSSSKRS SPDNQSLMTT TTCPSNQISP LTQVSYDPND LSLAFSRLQN  120
QESGQLVCPE LQRTVRTDDA IFSDSFCLTN FGNSALHDVL ENRGMCTSST KAISHAGFLD  180
ALRGGFLETP NGFLNHNLYY YGSNGNNGNN MGHVESASGE MVANFDQEVR SGVTTSIALK  240
EEMCSDNKIL LGYPWQINGD RNVADFEYSN GQNWYGLGFP SGHGLLNSPL M*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050832
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366600.20.0PREDICTED: dof zinc finger protein DOF2.1-like
TrEMBLM1CUK70.0M1CUK7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000750510.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-34TARGET OF MONOPTEROS 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]