PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400050746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92212.5 Da PI: 5.9154 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ PGSC0003DMP400050746 17 KYVRYTPEQVDALERLYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75 5678*****************************************************97 PP | |||||||
2 | START | 177.1 | 1.1e-55 | 162 | 370 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 laee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++++++l+v s+g PGSC0003DMP400050746 162 LAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCSGVASRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVMSTGng 249 7899******************************************************.8888888888******************** PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l +++l+a+++l+p Rdf+ Ry+ +++g++vi+++S++++q+ p+ +s+vRa lpSg+li+p+++g+s +++v+h+dl+ PGSC0003DMP400050746 250 GTIELLYMQLYAPTTLAPaRDFWLMRYTSVMEDGSLVICERSLNNTQNGPSmppVQSFVRADILPSGYLIRPCEGGGSIIHIVDHMDLE 338 *************************************************9998899********************************* PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqce 205 ++++++lr+l++s++ ++t++a+l+++++ PGSC0003DMP400050746 339 PWSVPEVLRPLYESSTLLSQRTTMAALRHLRQ 370 ***************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.58 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.4E-16 | 14 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-16 | 16 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.73E-16 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 3.5E-16 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-18 | 19 | 75 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 8.36E-6 | 69 | 108 | No hit | No description |
PROSITE profile | PS50848 | 25.755 | 152 | 380 | IPR002913 | START domain |
CDD | cd08875 | 2.32E-80 | 156 | 371 | No hit | No description |
SMART | SM00234 | 9.8E-40 | 161 | 371 | IPR002913 | START domain |
Pfam | PF01852 | 5.7E-53 | 162 | 370 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.59E-37 | 162 | 372 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.3E-22 | 162 | 367 | IPR023393 | START-like domain |
Pfam | PF08670 | 7.0E-50 | 696 | 838 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 840 aa Download sequence Send to blast |
MAVTSSCKDK FGMDSGKYVR YTPEQVDALE RLYHECPKPS SLRRQQLIRE CPILSNIEPK 60 QIKVWFQNRR CREKQRKESS RLQGVNRKLT AMNKLLMEEN DRLQKQVSQL VYENSFFRQQ 120 TQTAALATTD NNSCESVVTS GQHNLTPQRP PRDASPAGLL SLAEETLTEF LSKATGTAVE 180 WVQMPGMKPG PDSIGIIAIS HGCSGVASRA CGLVGLEPTR VAEILKDRPS WFRDCRAVDV 240 LNVMSTGNGG TIELLYMQLY APTTLAPARD FWLMRYTSVM EDGSLVICER SLNNTQNGPS 300 MPPVQSFVRA DILPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTLLSQRT 360 TMAALRHLRQ ISQEISHPTV SGWGRRPAAL RALGQRLSKG FNEAVNGFTD EGWSMLESDG 420 IDDVTILVNS SPSKLMGANL SYANGFPSMS SAVLCAKASM LLQNVPPAIL LRFLREHRSE 480 WADSGIDAYS AAAVKAGPCS IPVTRTGSFG GQIILPLAHT IEHEEFMEVI RLESIGHYQD 540 DMIMPSDIFL LQLCNGVDEN AVGSCAELMF APIDASFADD APLLPSGFRI IPLDAKADAS 600 SPNRTLDLAS TLEVGPAGSR PTGDHSKNSG STKSVMTIAF QFAFEIHLQE SIAAMARQYV 660 RSIISSVQRV ALALSPSRIG SLPGLRSPPG TPEAQTLARW ICQSYRYFLG VELLKSASGG 720 SDTILKEIWD HSDALMCCSM KALPVFTFAN EAGLDMLETT LVALQDISLE KIFDDNGRKA 780 LYSELPQIMQ QGFACLQGGI CLSSMGRPIS YERAVAWKVL NEEEDAHCIC FMFINWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400050746 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006359741.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | M1CUD5 | 0.0 | M1CUD5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400074934 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400050746 |
Publications ? help Back to Top | |||
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