PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400050388
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 193aa    MW: 21956.2 Da    PI: 4.5729
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400050388genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23e-162576155
                   AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ ++eeAa a++ a+ +++g
  PGSC0003DMP400050388 25 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYASEEEAAMAYDMAAIQYRG 76
                          79****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.9E-152189IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.11E-252586No hitNo description
SuperFamilySSF541712.03E-182586IPR016177DNA-binding domain
PfamPF008472.3E-122576IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-182684IPR001471AP2/ERF domain
SMARTSM003802.6E-262690IPR001471AP2/ERF domain
PROSITE profilePS5103218.3342684IPR001471AP2/ERF domain
PRINTSPR003673.3E-52738IPR001471AP2/ERF domain
PRINTSPR003673.3E-56686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESQSREEYI GSLRRKSSGF SRGVSRYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYASE  60
EEAAMAYDMA AIQYRGPNAV TNFDISRYNN CSGPNPNDMN PMPSTKEEKA SSVVDCPETP  120
PEVEKSRRST TFPDDIQTYF DCQDSSSTFM EDSHIIFGDL ESFVLPMMFE CHQLEEFLSF  180
SPYSELELET SD*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400050388
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-161HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366265.11e-143PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-60AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLM1CTM61e-142M1CTM6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000743971e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-58ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]